IL_4V8H_061

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V8H|1|AA|A|1492, 4V8H|1|AA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_061 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2568

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V8H|1|AA|C|1407
4V8H|1|AA|A|1408
4V8H|1|AA|C|1409
*
4V8H|1|AA|G|1491
4V8H|1|AA|A|1492
4V8H|1|AA|A|1493
4V8H|1|AA|G|1494

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal Protein S12

Chain AX

Probable sigma(54) modulation protein

Chain BA

Large subunit ribosomal RNA; LSU rRNA