IL_4V8H_114

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_114 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0547

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V8H|1|BA|G|1319
4V8H|1|BA|C|1320
4V8H|1|BA|A|1321
4V8H|1|BA|A|1322
4V8H|1|BA|U|1323
*
4V8H|1|BA|A|1331
4V8H|1|BA|G|1332
4V8H|1|BA|C|1333

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BW

50S Ribosomal Protein L22

Chain BX

50S Ribosomal Protein L23