IL_4V8H_168

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_168 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0631

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8H|1|BA|C|2652
4V8H|1|BA|U|2653
4V8H|1|BA|A|2654
4V8H|1|BA|G|2655
4V8H|1|BA|U|2656
4V8H|1|BA|A|2657
4V8H|1|BA|C|2658
*
4V8H|1|BA|G|2663
4V8H|1|BA|G|2664
4V8H|1|BA|A|2665
4V8H|1|BA|C|2666
4V8H|1|BA|C|2667
4V8H|1|BA|G|2668

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6