3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8H_227 not in the Motif Atlas
Homologous match to IL_4LFB_047
Geometric discrepancy: 0.1829
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

4V8H|1|CA|G|1061
4V8H|1|CA|U|1062
4V8H|1|CA|C|1063
*
4V8H|1|CA|G|1193
4V8H|1|CA|U|1194
4V8H|1|CA|C|1195

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CC
30S Ribosomal Protein S3
Chain CE
30S Ribosomal Protein S5
Chain CJ
30S Ribosomal Protein S10
Chain CN
30S Ribosomal Protein S14

Coloring options:


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