IL_4V8H_342
3D structure
- PDB id
- 4V8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of HPF bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAA*UUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GAA,UUC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8H_342 not in the Motif Atlas
- Geometric match to IL_5C5W_002
- Geometric discrepancy: 0.1592
- The information below is about IL_5C5W_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V8H|1|DA|G|2588
4V8H|1|DA|A|2589
4V8H|1|DA|A|2590
*
4V8H|1|DA|U|2604
4V8H|1|DA|U|2605
4V8H|1|DA|C|2606
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain DD
- 50S Ribosomal Protein L2
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