IL_4V8H_372

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V8H|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_372 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1017

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8H|1|DA|C|844
4V8H|1|DA|G|845
4V8H|1|DA|C|846
4V8H|1|DA|U|847
4V8H|1|DA|G|848
4V8H|1|DA|A|849
4V8H|1|DA|C|850
*
4V8H|1|DA|G|927
4V8H|1|DA|G|928
4V8H|1|DA|U|930
4V8H|1|DA|G|931
4V8H|1|DA|G|932
4V8H|1|DA|A|933
4V8H|1|DA|G|934

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain BP

50S Ribosomal Protein L15

Chain D3

50S Ribosomal Protein L30