IL_4V8H_378

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V8H|1|AA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_378 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.2364

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8H|1|AA|G|933
4V8H|1|AA|C|934
4V8H|1|AA|A|935
*
4V8H|1|AA|U|1380
4V8H|1|AA|U|1381
4V8H|1|AA|C|1382
4V8H|1|AA|C|1383
4V8H|1|AA|C|1384

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AG

30S Ribosomal Protein S7

Chain AI

30S Ribosomal Protein S9

Chain AX

Probable sigma(54) modulation protein