IL_4V8I_055

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V8I|1|AA|C|1400, 4V8I|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8I_055 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1742

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V8I|1|AA|C|1399
4V8I|1|AA|C|1400
4V8I|1|AA|G|1401
*
4V8I|1|AA|C|1501
4V8I|1|AA|A|1502
4V8I|1|AA|A|1503
4V8I|1|AA|G|1504

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AY

Ribosome-associated inhibitor A