IL_4V8I_353

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V8I|1|BA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8I_353 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0934

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8I|1|BA|C|844
4V8I|1|BA|G|845
4V8I|1|BA|C|846
4V8I|1|BA|U|847
4V8I|1|BA|G|848
4V8I|1|BA|A|849
4V8I|1|BA|C|850
*
4V8I|1|BA|G|927
4V8I|1|BA|G|928
4V8I|1|BA|U|930
4V8I|1|BA|G|931
4V8I|1|BA|G|932
4V8I|1|BA|A|933
4V8I|1|BA|G|934

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S Ribosomal Protein L30