IL_4V8J_018

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_018 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1481

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8J|1|AA|G|440
4V8J|1|AA|G|441
4V8J|1|AA|A|442
4V8J|1|AA|C|443
4V8J|1|AA|G|444
*
4V8J|1|AA|C|467
4V8J|1|AA|G|468
4V8J|1|AA|G|469
4V8J|1|AA|U|470
4V8J|1|AA|A|471
4V8J|1|AA|C|472

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9