IL_4V8J_036

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

ACG*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_036 not in the Motif Atlas

Geometric match to IL_5D0B_001

Geometric discrepancy: 0.1961

The information below is about IL_5D0B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8J|1|AA|A|900
4V8J|1|AA|C|901
4V8J|1|AA|G|902
*
4V8J|1|AA|U|1373
4V8J|1|AA|G|1374
4V8J|1|AA|U|1375

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S5