IL_4V8J_039
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8J_039 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.2862
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8J|1|AA|U|929
4V8J|1|AA|G|930
4V8J|1|AA|G|931
*
4V8J|1|AA|C|1207
4V8J|1|AA|A|1208
4V8J|1|AA|C|1209
4V8J|1|AA|A|1210
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AM
- 30S ribosomal protein S13
- Chain AS
- 30S ribosomal protein S19
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- Transfer RNA; tRNA
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