IL_4V8J_197

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_197 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1048

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V8J|1|CA|G|404
4V8J|1|CA|G|405
4V8J|1|CA|A|406
4V8J|1|CA|A|407
4V8J|1|CA|G|408
4V8J|1|CA|A|409
4V8J|1|CA|A|410
4V8J|1|CA|G|411
*
4V8J|1|CA|U|422
4V8J|1|CA|G|423
4V8J|1|CA|U|424
4V8J|1|CA|A|425
4V8J|1|CA|A|426
4V8J|1|CA|A|427
4V8J|1|CA|C|428

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4