IL_4V8J_200

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_200 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0919

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V8J|1|CA|C|487
4V8J|1|CA|G|488
4V8J|1|CA|G|489
4V8J|1|CA|C|490
4V8J|1|CA|C|491
4V8J|1|CA|A|492
4V8J|1|CA|A|493
4V8J|1|CA|C|494
*
4V8J|1|CA|G|523
4V8J|1|CA|G|524

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12