IL_4V8J_236

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_236 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1311

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V8J|1|CA|G|1398
4V8J|1|CA|G|1399
4V8J|1|CA|A|1400
4V8J|1|CA|G|1401
*
4V8J|1|CA|U|1458
4V8J|1|CA|G|1459
4V8J|1|CA|A|1460
4V8J|1|CA|C|1461

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA