IL_4V8J_242

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_242 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0576

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8J|1|DA|G|24
4V8J|1|DA|U|25
4V8J|1|DA|G|26
4V8J|1|DA|G|27
4V8J|1|DA|A|28
4V8J|1|DA|U|29
4V8J|1|DA|G|30
*
4V8J|1|DA|C|510
4V8J|1|DA|U|511
4V8J|1|DA|G|512
4V8J|1|DA|A|513
4V8J|1|DA|A|514
4V8J|1|DA|A|515
4V8J|1|DA|C|516

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22