IL_4V8J_322

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_322 not in the Motif Atlas

Homologous match to IL_7A0S_078

Geometric discrepancy: 0.104

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V8J|1|DA|C|2085
4V8J|1|DA|U|2086
4V8J|1|DA|G|2087
*
4V8J|1|DA|U|2232
4V8J|1|DA|U|2233
4V8J|1|DA|G|2234

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2