IL_4V8J_388

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V8J|1|BA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_388 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3789

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V8J|1|BA|C|2129
4V8J|1|BA|U|2130
4V8J|1|BA|G|2131
4V8J|1|BA|U|2132
4V8J|1|BA|G|2133
4V8J|1|BA|A|2134
4V8J|1|BA|A|2135
4V8J|1|BA|C|2136
*
4V8J|1|BA|G|2155
4V8J|1|BA|G|2156
4V8J|1|BA|G|2157
4V8J|1|BA|A|2158
4V8J|1|BA|G|2159

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L1