IL_4V8N_004

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_004 not in the Motif Atlas

Homologous match to IL_6CZR_116

Geometric discrepancy: 0.1146

The information below is about IL_6CZR_116

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8N|1|AA|C|54
4V8N|1|AA|A|55
4V8N|1|AA|U|56
*
4V8N|1|AA|A|356
4V8N|1|AA|G|357

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20