IL_4V8N_008

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V8N|1|AA|G|129|||A, 4V8N|1|AA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_008 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1772

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V8N|1|AA|U|129
4V8N|1|AA|G|129|||A
4V8N|1|AA|A|130
4V8N|1|AA|C|131
*
4V8N|1|AA|G|231
4V8N|1|AA|G|232

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain AT

30S RIBOSOMAL PROTEIN S20