IL_4V8N_031

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V8N|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_031 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1178

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8N|1|AA|G|662
4V8N|1|AA|A|663
4V8N|1|AA|G|664
4V8N|1|AA|A|665
4V8N|1|AA|G|666
*
4V8N|1|AA|U|740
4V8N|1|AA|G|741
4V8N|1|AA|G|742
4V8N|1|AA|U|743

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AF

30S RIBOSOMAL PROTEIN S6

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AR

30S RIBOSOMAL PROTEIN S18