IL_4V8N_033

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_033 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1211

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V8N|1|AA|G|774
4V8N|1|AA|G|775
4V8N|1|AA|G|776
4V8N|1|AA|A|777
4V8N|1|AA|G|778
*
4V8N|1|AA|U|804
4V8N|1|AA|C|805

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2