IL_4V8N_200

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V8N|1|CA|U|244, 4V8N|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_200 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0806

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V8N|1|CA|C|242
4V8N|1|CA|A|243
4V8N|1|CA|U|244
4V8N|1|CA|C|245
4V8N|1|CA|A|246
4V8N|1|CA|G|247
*
4V8N|1|CA|C|277
4V8N|1|CA|G|278
4V8N|1|CA|A|279
4V8N|1|CA|C|280
4V8N|1|CA|G|281
4V8N|1|CA|A|282
4V8N|1|CA|C|283
4V8N|1|CA|G|284

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17