IL_4V8N_228
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_228 not in the Motif Atlas
- Geometric match to IL_4KYY_002
- Geometric discrepancy: 0.3014
- The information below is about IL_4KYY_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V8N|1|CA|U|952
4V8N|1|CA|G|953
4V8N|1|CA|G|954
*
4V8N|1|CA|C|1226
4V8N|1|CA|A|1227
4V8N|1|CA|C|1228
4V8N|1|CA|A|1229
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CS
- 30S RIBOSOMAL PROTEIN S19
- Chain CV
- Transfer RNA; tRNA
- Chain CY
- Transfer RNA; tRNA
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