IL_4V8N_237

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_237 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3859

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8N|1|CA|U|1122
4V8N|1|CA|A|1123
4V8N|1|CA|G|1124
*
4V8N|1|CA|C|1149
4V8N|1|CA|U|1150
4V8N|1|CA|A|1151

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10