IL_4V8N_244

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_244 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.165

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8N|1|CA|G|1401
4V8N|1|CA|C|1402
4V8N|1|CA|C|1403
4V8N|1|CA|C|1404
*
4V8N|1|CA|G|1497
4V8N|1|CA|U|1498
4V8N|1|CA|A|1499
4V8N|1|CA|A|1500
4V8N|1|CA|C|1501

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain CX

MRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA