IL_4V8N_250

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V8N|1|CA|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_250 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.4145

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8N|1|CA|C|1440
4V8N|1|CA|G|1441
4V8N|1|CA|G|1442
4V8N|1|CA|G|1442|||A
4V8N|1|CA|A|1442|||B
4V8N|1|CA|G|1443
*
4V8N|1|CA|C|1459
4V8N|1|CA|A|1460
4V8N|1|CA|G|1461

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S RIBOSOMAL PROTEIN L19