IL_4V8N_277

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_277 not in the Motif Atlas

Homologous match to IL_7RQB_024

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_024

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_92001.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

4V8N|1|DA|C|837
4V8N|1|DA|C|838
*
4V8N|1|DA|G|940
4V8N|1|DA|A|941
4V8N|1|DA|G|942

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DP

50S RIBOSOMAL PROTEIN L15