IL_4V8N_312

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4V8N|1|DA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_312 not in the Motif Atlas

Geometric match to IL_7RQB_061

Geometric discrepancy: 0.3037

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V8N|1|DA|U|1481
4V8N|1|DA|G|1482
*
4V8N|1|DA|C|1506
4V8N|1|DA|A|1507
4V8N|1|DA|A|1508
4V8N|1|DA|C|1509
4V8N|1|DA|A|1509|||A
4V8N|1|DA|A|1509|||B
4V8N|1|DA|G|1510

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains