IL_4V8N_371
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_371 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1178
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8N|1|DB|U|34
4V8N|1|DB|U|35
4V8N|1|DB|C|36
4V8N|1|DB|C|37
4V8N|1|DB|C|38
*
4V8N|1|DB|G|44
4V8N|1|DB|A|45
4V8N|1|DB|A|46
4V8N|1|DB|C|47
4V8N|1|DB|A|48
Current chains
- Chain DB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain D4
- 50S RIBOSOMAL PROTEIN L31
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S RIBOSOMAL PROTEIN L5
- Chain DS
- 50S RIBOSOMAL PROTEIN L18
Coloring options: