IL_4V8N_373
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_373 not in the Motif Atlas
- Geometric match to IL_7A0S_107
- Geometric discrepancy: 0.2376
- The information below is about IL_7A0S_107
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V8N|1|DB|U|80
4V8N|1|DB|G|81
4V8N|1|DB|G|82
*
4V8N|1|DB|C|95
4V8N|1|DB|U|96
4V8N|1|DB|G|97
Current chains
- Chain DB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain D3
- 50S RIBOSOMAL PROTEIN L30
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: