IL_4V8N_387

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_387 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.3332

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8N|1|BA|G|272|||C
4V8N|1|BA|G|272|||D
4V8N|1|BA|G|272|||E
*
4V8N|1|BA|U|363|||E
4V8N|1|BA|A|363|||F
4V8N|1|BA|C|364
4V8N|1|BA|C|365

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BI

50S RIBOSOMAL PROTEIN L9