IL_4V8N_403
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUC*GUCUGGU
- Length
- 13 nucleotides
- Bulged bases
- 4V8N|1|CA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_403 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2797
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8N|1|CA|G|1058
4V8N|1|CA|C|1059
4V8N|1|CA|C|1060
4V8N|1|CA|G|1061
4V8N|1|CA|U|1062
4V8N|1|CA|C|1063
*
4V8N|1|CA|G|1193
4V8N|1|CA|U|1194
4V8N|1|CA|C|1195
4V8N|1|CA|U|1196
4V8N|1|CA|G|1197
4V8N|1|CA|G|1198
4V8N|1|CA|U|1199
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CC
- 30S RIBOSOMAL PROTEIN S3
- Chain CE
- 30S RIBOSOMAL PROTEIN S5
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CJ
- 30S RIBOSOMAL PROTEIN S10
- Chain CN
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain CX
- MRNA
- Chain CY
- Transfer RNA; tRNA
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