IL_4V8N_414

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

4V8N|1|DA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_414 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3843

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_64900.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

4V8N|1|DA|C|2128
4V8N|1|DA|C|2129
4V8N|1|DA|U|2130
4V8N|1|DA|G|2131
4V8N|1|DA|U|2132
4V8N|1|DA|G|2133
4V8N|1|DA|A|2134
4V8N|1|DA|A|2135
4V8N|1|DA|C|2136
*
4V8N|1|DA|G|2155
4V8N|1|DA|G|2156
4V8N|1|DA|G|2157
4V8N|1|DA|A|2158
4V8N|1|DA|G|2159
4V8N|1|DA|G|2160

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DC

50S RIBOSOMAL PROTEIN L1