IL_4V8N_415

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V8N|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_415 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1661

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V8N|1|AA|G|148
4V8N|1|AA|A|149
4V8N|1|AA|C|150
4V8N|1|AA|A|151
4V8N|1|AA|A|152
4V8N|1|AA|C|153
*
4V8N|1|AA|G|168
4V8N|1|AA|C|169
4V8N|1|AA|U|170
4V8N|1|AA|A|171
4V8N|1|AA|A|172
4V8N|1|AA|U|173
4V8N|1|AA|C|174

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20