IL_4V8N_422

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

4V8N|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_422 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3183

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8N|1|BA|G|880
4V8N|1|BA|G|881
4V8N|1|BA|G|882
4V8N|1|BA|G|883
*
4V8N|1|BA|C|893
4V8N|1|BA|C|894
4V8N|1|BA|U|895
4V8N|1|BA|A|896
4V8N|1|BA|C|897

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BZ

50S RIBOSOMAL PROTEIN L25