IL_4V8N_429

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4V8N|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_429 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.2238

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4V8N|1|CA|G|1124
4V8N|1|CA|U|1125
4V8N|1|CA|U|1126
4V8N|1|CA|G|1127
4V8N|1|CA|C|1128
*
4V8N|1|CA|G|1143
4V8N|1|CA|G|1144
4V8N|1|CA|C|1145
4V8N|1|CA|A|1146
4V8N|1|CA|C|1147
4V8N|1|CA|U|1148
4V8N|1|CA|C|1149

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10