IL_4V8O_004

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACAU*AGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_004 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.3683

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8O|1|AA|A|53
4V8O|1|AA|C|54
4V8O|1|AA|A|55
4V8O|1|AA|U|56
*
4V8O|1|AA|A|356
4V8O|1|AA|G|357
4V8O|1|AA|U|358

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 3