IL_4V8O_056

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUC,GACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_056 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2377

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V8O|1|AA|G|1311
4V8O|1|AA|G|1312
4V8O|1|AA|U|1313
4V8O|1|AA|C|1314
*
4V8O|1|AA|G|1323
4V8O|1|AA|A|1324
4V8O|1|AA|C|1325
4V8O|1|AA|C|1326

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AU

30S RIBOSOMAL PROTEIN THX