IL_4V8O_067

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_067 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.2417

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8O|1|AV|G|49
4V8O|1|AV|U|50
4V8O|1|AV|C|51
*
4V8O|1|AV|G|63
4V8O|1|AV|G|64
4V8O|1|AV|C|65

Current chains

Chain AV

PE HYBRID STATE TRNA FMET

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L33

Chain BC

50S RIBOSOMAL PROTEIN L1