IL_4V8O_084

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_084 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1722

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8O|1|BA|C|535
4V8O|1|BA|A|536
4V8O|1|BA|C|537
*
4V8O|1|BA|G|556
4V8O|1|BA|U|557
4V8O|1|BA|G|558

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BV

50S RIBOSOMAL PROTEIN L21