IL_4V8O_106

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_106 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.2496

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V8O|1|BA|G|1002
4V8O|1|BA|G|1003
4V8O|1|BA|C|1004
*
4V8O|1|BA|G|1151
4V8O|1|BA|C|1152
4V8O|1|BA|C|1153

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BU

50S RIBOSOMAL PROTEIN L20