IL_4V8O_113
3D structure
- PDB id
- 4V8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGG*UGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8O_113 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.317
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V8O|1|BA|G|1039
4V8O|1|BA|C|1040
4V8O|1|BA|G|1041
4V8O|1|BA|G|1042
*
4V8O|1|BA|U|1113
4V8O|1|BA|G|1114
4V8O|1|BA|G|1115
4V8O|1|BA|C|1116
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B9
- 50S RIBOSOMAL PROTEIN L36
- Chain BH
- 50S RIBOSOMAL PROTEIN L6
- Chain BJ
- 50S RIBOSOMAL PROTEIN L10
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
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