IL_4V8O_206

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUGAC*GGC

Length

8 nucleotides

Bulged bases

4V8O|1|AA|G|129|||A, 4V8O|1|AA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_206 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.4787

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V8O|1|AA|G|128
4V8O|1|AA|U|129
4V8O|1|AA|G|129|||A
4V8O|1|AA|A|130
4V8O|1|AA|C|131
*
4V8O|1|AA|G|231
4V8O|1|AA|G|232
4V8O|1|AA|C|233

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain AT

30S RIBOSOMAL PROTEIN S20