IL_4V8P_005

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AU*AAUUGU

Length

8 nucleotides

Bulged bases

4V8P|1|A1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_005 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1887

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8P|1|A1|A|121
4V8P|1|A1|U|122
*
4V8P|1|A1|A|144
4V8P|1|A1|A|145
4V8P|1|A1|U|146
4V8P|1|A1|U|147
4V8P|1|A1|G|148
4V8P|1|A1|U|149

Current chains

Chain A1

26S RRNA

Nearby chains

Chain B2

5.8S ribosomal RNA; 5.8S rRNA

Chain BF

RPL7A

Chain BL

RIBOSOMAL PROTEIN L15