IL_4V8P_007

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

4V8P|1|A1|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_007 not in the Motif Atlas

Geometric match to IL_5J7L_334

Geometric discrepancy: 0.341

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V8P|1|A1|G|158
4V8P|1|A1|G|159
*
4V8P|1|A1|U|260
4V8P|1|A1|U|261
4V8P|1|A1|C|262

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AQ

60S RIBOSOMAL PROTEIN L36