IL_4V8P_008

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_008 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.1757

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4V8P|1|A1|C|162
4V8P|1|A1|A|163
4V8P|1|A1|A|164
4V8P|1|A1|C|165
*
4V8P|1|A1|G|254
4V8P|1|A1|G|255
4V8P|1|A1|A|256
4V8P|1|A1|G|257

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AU

RPL13

Chain BU

RPL35