IL_4V8P_011

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CU*AAGG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|A|241, 4V8P|1|A1|G|242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_011 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.233

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V8P|1|A1|C|177
4V8P|1|A1|U|178
*
4V8P|1|A1|A|240
4V8P|1|A1|A|241
4V8P|1|A1|G|242
4V8P|1|A1|G|243

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AA

RIBOSOMAL PROTEIN L37

Chain B2

5.8S ribosomal RNA; 5.8S rRNA

Chain BU

RPL35