IL_4V8P_013

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

4V8P|1|A1|A|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_013 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1034

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V8P|1|A1|G|336
4V8P|1|A1|A|337
4V8P|1|A1|C|338
*
4V8P|1|B2|G|28
4V8P|1|B2|U|29

Current chains

Chain A1

26S RRNA

Chain B2

5.8S RRNA

Nearby chains

Chain BC

RPL4

Chain BS

RPL26