IL_4V8P_014
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAC*GGGCUAAAAGAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_014 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.2824
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|A1|G|375
4V8P|1|A1|A|376
4V8P|1|A1|A|377
4V8P|1|A1|C|378
*
4V8P|1|A1|G|389
4V8P|1|A1|G|390
4V8P|1|A1|G|391
4V8P|1|A1|C|392
4V8P|1|A1|U|393
4V8P|1|A1|A|394
4V8P|1|A1|A|395
4V8P|1|A1|A|396
4V8P|1|A1|A|397
4V8P|1|A1|G|398
4V8P|1|A1|A|399
4V8P|1|A1|C|400
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AB
- RPL39
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BQ
- RPL17
- Chain BS
- RPL26
Coloring options: